@Boabster
To make it easiest for you, you can take the settings from my .uae config and play with the settings a bit, but it should be set so that it will work well for you.
It is best to create a backup before you make any changes to your .uae config.
# UAE config for RunInUAE, which is designed to modify an existing working UAE config
# Use 3.1 Kickstart for Workbench, but allow ADF-booted games to still use an older Kickstart
kickstart_rom_file=AmigaOS4:Emulation/AmigaROMs/kick3.1.rom
#kickstart_rom_file=kick3.1.rom
immediate_blits=yes
ppc.use_tbc=false
#JIT†compiller†settings
cpu_type=68040
cpu_speed=max
cpu_compatible=false
cpu_cycle_exact=false
blitter_cycle_exact=false
cachesize=8192
#†memory†access†mode†direct†indirect=default†indirectKS†afterPic
comp_constjump=true
comp_trustbyte=indirect
comp_trustword=indirect
comp_trustlong=indirect
comp_optimize=true
chipset=aga
#collision†detection††none†sprites†playfields=default†full
collision_level=none
chipmem_size=4
bogomem_size=0
fastmem_size=0
z3mem_size=32
gfxcard_size=32
gfx_framerate=1
gfx_width_windowed=800
gfx_height_windowed=600
gfx_width_fullscreen=800
gfx_height_fullscreen=600
gfx_lores=false
gfx_linemode=double
gfx_correct_aspect=false
gfx_center_horizontal=smart
gfx_center_vertical=smart
#show_leds=true
gfx_fullscreen_amiga=false
gfx_fullscreen_picasso=true
sound_output=normal
sound_frequency=44100
sound_channels=stereo
sound_bits=16
joyport0=mouse
joyport1=kbd2
#SDL†specific
#sdl.use_gl=true
#AmigaOS†specific
##screen†type†public†public†ask
#amiga.screen_type=ask
#amiga.publicscreen=<name>
#amiga.use_dither=true
#amiga.use_overlay=false
I left out the part with the hardfile configuration because you have to customize it for your setup anyway.
Let me know if it has had any effect on you